Mangroves and mudflats provide important breeding and feeding habitats for resident and migratory shore birds. In Sarawak, the proposed Pulau Bruit National Park is being gazetted to protect one of the most important sites for migratory birds in Eastern Asia. Mudflats associated with mangroves are very important for resident and migrating shore birds and several areas in Borneo are protected specifically for birdlife.
The large, fish-eating Brahminy kite (Haliastur indus) and the White-bellied sea eagle (Haliaeetus leocogaster) are commonly seen over large rivers and mangrove areas while arboreal mammals especially flying foxes (Pteropus) and fruitbats (Macroglossus) dominate the terrestrial component of the mangrove fauna.